NANOGEN INC Contracts & Agreements

AMENDMENT NO. 1 TO ASSET PURCHASE AGREEMENT (Filed With SEC on July 9, 2009)

AMENDMENT NO. 2 TO ASSET PURCHASE AGREEMENT (Filed With SEC on July 9, 2009)

ASSET PURCHASE AGREEMENT BY AND AMONG FINANCIERE ELITECH SAS, (Filed With SEC on May 15, 2009)

CONSENT AND WAIVER (Filed With SEC on January 21, 2009)

CONSENT AND AGREEMENT (Filed With SEC on November 18, 2008)

GUARANTY (Filed With SEC on November 14, 2008)

PLEDGE AS COLLATERAL ON QUOTA (Filed With SEC on November 14, 2008)

WHEREAS (Filed With SEC on November 14, 2008)

SHARE EXCHANGE AGREEMENT BY AND AMONG NANOGEN, INC., FINANCIÈRE ELITECH SAS (Filed With SEC on August 15, 2008)

AMENDMENT NO. 2 TO RIGHTS AGREEMENT (Filed With SEC on August 15, 2008)

RECITALS OF THE COMPANY (Filed With SEC on August 15, 2008)

[FORM OF AMENDED AND RESTATED SENIOR SECURED CONVERTIBLE NOTES] (Filed With SEC on August 15, 2008)

[FORM OF SENIOR SECURED CONVERTIBLE NOTES] NANOGEN, INC. SENIOR SECURED CONVERTIBLE NOTE (Filed With SEC on August 15, 2008)

[FORM OF SENIOR SECURED CONVERTIBLE BRIDGE NOTES] (Filed With SEC on August 15, 2008)

VOTING AGREEMENT (Filed With SEC on August 15, 2008)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on August 15, 2008)

SECOND AMENDMENT AND EXCHANGE AGREEMENT (Filed With SEC on August 15, 2008)

CONSENT AND AGREEMENT (Filed With SEC on August 15, 2008)

LIMITED GUARANTY (Filed With SEC on August 15, 2008)

SECURITY AGREEMENT (Filed With SEC on August 15, 2008)

SECOND LIEN SECURITY AGREEMENT (Filed With SEC on August 15, 2008)

AMENDED AND RESTATED SECURITY AGREEMENT (Filed With SEC on August 15, 2008)

GUARANTY (Filed With SEC on August 15, 2008)

CASH COMPENSATION SUSPENSION AGREEMENT (Filed With SEC on August 15, 2008)

FINANCIÈRE ELITECH S.A.S. 12-12 bis, rue Jean Jaurès (Filed With SEC on August 15, 2008)

INTERCREDITOR AGREEMENT (Filed With SEC on August 15, 2008)

AMENDMENT AND EXCHANGE AGREEMENT (Filed With SEC on May 12, 2008)

ROYALTYINTEREST ASSIGNMENT AGREEMENT between EPOCH BIOSCIENCES, INC. as Assignor and DRUG ROYALTY LP2 (Filed With SEC on May 12, 2008)

SECURITY AGREEMENT (Filed With SEC on May 12, 2008)

SUPPLEMENTAL ROYALTY INTEREST ASSIGNMENT AGREEMENT between EPOCH BIOSCIENCES, INC. as Assignor (Filed With SEC on May 12, 2008)

RECITALS OF THE COMPANY (Filed With SEC on March 28, 2008)

NANOGEN, INC. Senior Secured Convertible Note (Filed With SEC on March 28, 2008)

AMENDMENT AND CONSENT (Filed With SEC on March 28, 2008)

[FORM OF SENIOR SECURED CONVERTIBLE NOTES] NANOGEN, INC. Senior Secured Convertible Note (Filed With SEC on March 14, 2008)

ARTICLE I AMENDMENTS OF INDENTURE (Filed With SEC on March 14, 2008)

AMENDMENT AND EXCHANGE AGREEMENT (Filed With SEC on March 14, 2008)

SECURITY AGREEMENT (Filed With SEC on March 14, 2008)

CONSENT AND AGREEMENT (Filed With SEC on March 14, 2008)

EMPLOYMENT AGREEMENT (Filed With SEC on February 22, 2008)

Nanogen, Inc., Issuer and The Bank of New York Trust Company, N.A., Trustee Indenture Dated as of August 27, 2007 DEBT SECURITIES Nanogen, Inc. Debt Securities Cross Reference... (Filed With SEC on August 27, 2007)

NANOGEN, INC. as Issuer and THE BANK OF NEW YORK TRUST COMPANY, N.A. (Filed With SEC on August 27, 2007)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on August 27, 2007)

NANOGEN, INC. 6.25% SENIOR CONVERTIBLE NOTES DUE 2010 (Filed With SEC on August 27, 2007)

[FORM OF SERIES A WARRANT] NANOGEN, INC. (Filed With SEC on August 27, 2007)

[FORM OF SERIES B WARRANT] NANOGEN, INC. (Filed With SEC on August 27, 2007)

[FORM OF SERIES C WARRANT] NANOGEN, INC. (Filed With SEC on August 27, 2007)

NANOGEN, INC. $20 Million in 6.25% Senior Convertible Notes due 2010 and (Filed With SEC on August 27, 2007)

AMENDED AND RESTATED EMPLOYMENT AGREEMENT (Filed With SEC on February 23, 2007)

EMPLOYMENT AGREEMENT (Filed With SEC on February 23, 2007)

ASCENDIANT SECURITIES, LLC 18881 Von Karman Avenue, Suite 1600, Irvine, California 92612 Tel: (949) 259-4900| Fax ###-###-#### | www.ascendiant.com Member NASD/SIPC (Filed With SEC on February 5, 2007)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on February 5, 2007)

COMMON STOCK PURCHASE WARRANT To Purchase Shares of Common Stock of NANOGEN, INC. (Filed With SEC on February 5, 2007)

ROYALTYINTEREST ASSIGNMENT AGREEMENT between EPOCH BIOSCIENCES, INC. as Assignor and DRUG ROYALTY TRUST 9 (Filed With SEC on November 9, 2006)

SECURITY AGREEMENT (Filed With SEC on November 9, 2006)

AMENDED AND RESTATED INDEPENDENT CONTRACTOR AGREEMENT FOR CONSULTING SERVICES (Filed With SEC on November 9, 2006)

COMMON STOCK PURCHASE AGREEMENT Dated May 10, 2006 (Filed With SEC on May 10, 2006)

ASSET PURCHASE AGREEMENT (Filed With SEC on May 5, 2006)

NANOGEN, INC. CONVERTIBLE PROMISSORY NOTE CONVERTIBLE PROMISSORY NOTE (Filed With SEC on May 5, 2006)

AMENDMENT NO. 2 TO SECOND AMENDED AND RESTATED COLLABORATION, LICENSE AND SUPPLY AGREEMENT (Filed With SEC on March 16, 2006)

DEVELOPMENT AGREEMENT (Filed With SEC on March 16, 2006)

STOCK PURCHASE AGREEMENT (Filed With SEC on March 16, 2006)

MANUFACTURING AND DISTRIBUTION AGREEMENT (Filed With SEC on March 16, 2006)

2006EXECUTIVE OFFICER INCENTIVE COMPENSATION PLAN (Filed With SEC on March 16, 2006)

ASSET PURCHASE AGREEMENT dated as ofDecember 19 , 2005 between (Filed With SEC on December 23, 2005)

NANOGEN, INC. WARRANT (Filed With SEC on September 28, 2005)

NANOGEN, INC. (Filed With SEC on September 28, 2005)

EPOCH BIOSCIENCES, INC. 2003 STOCK INCENTIVE PLAN AS ASSUMED BY NANOGEN, INC. (Filed With SEC on March 15, 2005)

SECOND AMENDED AND RESTATED COLLABORATION, LICENSE AND SUPPLY AGREEMENT (Filed With SEC on March 15, 2005)

BACKGROUND (Filed With SEC on March 15, 2005)

AMENDMENT NO. 1 TO SECOND AMENDED AND RESTATED COLLABORATION, LICENSE AND SUPPLY AGREEMENT (Filed With SEC on March 15, 2005)

EMPLOYMENT AGREEMENT (Filed With SEC on January 11, 2005)

AGREEMENT AND PLAN OF MERGER AND REORGANIZATION among (Filed With SEC on September 8, 2004)

CROSS-LlCENSE_AGREEMENT on NT - proBNP (Filed With SEC on August 16, 2004)

PLAN OF ARRANGEMENT (Filed With SEC on May 6, 2004)

OF NANOGEN, INC. (Filed With SEC on March 30, 2004)

SEPARATION AGREEMENT AND RELEASE OF CLAIMS (Filed With SEC on March 30, 2004)

NANOGEN, INC. (Filed With SEC on March 9, 2004)

Number of Shares Purchased (Filed With SEC on September 22, 2003)

SIX MONTH WARRANT (Filed With SEC on September 22, 2003)

ONE YEAR WARRANT (Filed With SEC on September 22, 2003)

FIVE YEAR WARRANT (Filed With SEC on September 22, 2003)

SEPARATIONAGREEMENT AND RELEASE OF CLAIMS (Filed With SEC on March 31, 2003)

EMPLOYMENT AGREEMENT (Filed With SEC on March 31, 2003)

INDEMNIFICATION AGREEMENT (Filed With SEC on March 31, 2003)

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NANOGEN INC Contracts & Agreements