to PURCHASE AGREEMENT, dated as of April 18, 2003, by and among

EXHIBIT 10.7

Amendment No. 2 to Purchase Agreement

Execution Copy

AMENDMENT NO. 2

to

PURCHASE AGREEMENT,

dated as of April 18, 2003,

by and among

WILLIAMS ENERGY SERVICES, LLC,

WILLIAMS NATURAL GAS LIQUIDS, INC. and

WILLIAMS GP LLC

collectively, as Selling Parties,

and

WEG ACQUISITIONS, L.P.

a Delaware limited partnership,

as Buyer,

for the purchase and sale of

(i) all the membership interests of

WEG GP LLC

a Delaware limited liability company,

(ii) all of the Common Units and Subordinated Units of

WILLIAMS ENERGY PARTNERS L.P.

a Delaware limited partnership

owned by Williams Energy Services, LLC and Williams Natural Gas Liquids, Inc.

and

(iii) all the Class B Common Units of

WILLIAMS ENERGY PARTNERS L.P.

a Delaware limited partnership

dated as of January 6, 2004

AMENDMENT NO. 2

to

PURCHASE AGREEMENT

THIS AMENDMENT NO. 2 TO PURCHASE AGREEMENT (this “Amendment No. 2”) is made and entered into as of this 6th day of January 2004, by and among WILLIAMS ENERGY SERVICES, LLC, a Delaware limited liability company (“WES”), WILLIAMS NATURAL GAS LIQUIDS, INC., a Delaware corporation (“WNGL”), and WILLIAMS GP LLC, a Delaware limited liability company (the “Old Company,” and collectively with WES and WNGL, the “Selling Parties”), and MAGELLAN MIDSTREAM HOLDINGS, L.P., formerly WEG Acquisitions, L.P., a Delaware limited partnership (“Buyer”).

WITNESSETH:

WHEREAS, the Selling Parties and Buyer entered into the Purchase Agreement, dated as of April 18, 2003 (the “Purchase Agreement”), pursuant to which, on the terms and subject to the conditions set forth therein, the Selling Parties sold, and Buyer purchased, at the Closing the Securities (as such terms are defined in the Purchase Agreement); and

WHEREAS, in accordance with Section 9.8 of the Purchase Agreement, the Selling Parties and Buyer have agreed to enter into this Amendment No. 2 to amend the Purchase Agreement to the extent, and only to the extent, specified below;

NOW, THEREFORE, in consideration of the mutual terms, conditions and other agreements set forth herein and in the Purchase Agreement, the parties hereto agree as follows:

ARTICLE I

AMENDMENTS

Section 1.1. Amendment. The Purchase Agreement is hereby amended by deleting Schedule 1.3 attached thereto and replacing it with Schedule 1.3 attached to this Amendment No. 2.

ARTICLE I I

MISCELLANEOUS

Section 2.1. Signatures and Counterparts. Facsimile transmissions of any signed original document and/or retransmission of any signed facsimile transmission shall be the same as delivery of an original. At the request of Buyer or the Selling Parties, the parties will confirm facsimile transmission by signing a duplicate original document. This Amendment No. 2 may be executed in two or more counterparts, each of which shall be deemed an original and all of which together shall be considered one and the same document.

Section 2.2. Governing Law. This Amendment No. 2 shall be governed by and construed in accordance with the internal and substantive laws of New York and without regard to any conflicts of laws concepts that would apply the substantive law of some other jurisdiction.

Section 2.3. Continuation of Purchase Agreement. To the extent not amended hereby, the Purchase Agreement shall remain in full force and effect.

IN WITNESS WHEREOF, the parties hereto have executed this Amendment No. 2 as of the date first above written.

Schedule 1.3

Purchase Price Allocation

(dollars in table in millions)