AMYRIS, INC. Contracts & Agreements

Amendment No. 6 to Senior Secured Super Priority Debtor In Possession Loan Agreement (Filed With SEC on January 4, 2024)

Amended & Restated Plan Support Agreement, dated as of December 12, 2023, by and among the Debtors and Consenting Parties (Filed With SEC on December 13, 2023)

Amendment No. 5 to Senior Secured Super Priority Debtor In Possession Loan Agreement (Filed With SEC on December 13, 2023)

Amendment No. 4 (Filed With SEC on October 13, 2023)

Amendment No. 3 to Senior Secured Super Priority Debtor In Possession Loan Agreement (Filed With SEC on October 4, 2023)

Amendment No. 2 to Senior Secured Super Priority Debtor In Possession Loan Agreement (Filed With SEC on September 28, 2023)

Amendment No. 1 to Senior Secured Super Priority Debtor In Possession Loan Agreement (Filed With SEC on September 19, 2023)

Loan and Security Agreement, dated (Filed With SEC on August 3, 2023)

Loan and Security Agreement, dated June 29, 2023, by and among the Company, the Subsidiary Guarantors and Anjo Ventures, LLC (Filed With SEC on June 29, 2023)

Loan and Security Agreement, dated June 5, 2023, by and among the Company, the Subsidiary Guarantors and Anesma Group, LLC (Filed With SEC on June 5, 2023)

Omnibus Amendment Agreement, dated June 5, 2023, to that certain Amended and Restated Loan Agreement, October 28, 2019, by and among the Company, the Subsidiary Guarantors and... (Filed With SEC on June 5, 2023)

Omnibus Amendment Agreement, dated June 5, 2023, to that certain Amended and Restated Loan Agreement, September 27, 2022, by and among the Company, the Subsidiary Guarantors and... (Filed With SEC on June 5, 2023)

Omnibus Amendment Agreement, dated June 5, 2023, to that certain Amended and Restated Loan Agreement, March 10, 2023, by and among the Company, the Subsidiary Guarantors and... (Filed With SEC on June 5, 2023)

Asset Purchase Agreement by and among Givaudan SA, Aprinnova, LLC and Amyris, Inc., dated February 21, 2023 (Filed With SEC on May 10, 2023)

First Amendment to Share Purchase Agreement by and among Nikko Chemicals Co., Ltd., Nippon Surfactant Industries Co., Ltd., Aprinnova LLC, and Amyris, Inc., dated February 13, 2023 (Filed With SEC on May 10, 2023)

Second Amendment to Share Purchase Agreement by and among Nikko Chemicals Co., Ltd., Nippon Surfactant Industries Co., Ltd., Aprinnova LLC, and Amyris, Inc., dated March 17, 2023 (Filed With SEC on May 10, 2023)

Executive Severance Plan, effective (Filed With SEC on March 16, 2023)

Amendment to Warrant to Purchase Shares of Common Stock, dated March 10, 2023 by and between the Company and Foris Ventures, LLC (Filed With SEC on March 14, 2023)

Loan and Security Agreement, dated March 10, 2023, by and among the Company, the Subsidiary Guarantors and Perrara Ventures, LLC (Filed With SEC on March 14, 2023)

Form of Registered Warrant (Filed With SEC on December 29, 2022)

Form of Unregistered Warrant (Filed With SEC on December 29, 2022)

Form of RDO Securities Purchase Agreement (Filed With SEC on December 29, 2022)

Form of PIPE Security Purchase Agreement (Filed With SEC on December 29, 2022)

Amended LSA (Filed With SEC on December 16, 2022)

Purchase Agreement (Filed With SEC on December 16, 2022)

Amendment and Restatement Agreement, dated September 27, 2022, by and among the Company, the Subsidiary Guarantors and Foris Ventures, LLC (Filed With SEC on November 8, 2022)

Loan and Security Agreement dated October (Filed With SEC on October 11, 2022)

Common Stock Purchase Warrant issued September 13, 2022 by the Company to Foris Ventures, LLC (Filed With SEC on September 13, 2022)

Loan and Security Agreement dated September 13, 2022, by and among the Company, the Subsidiary Guarantors and Foris Ventures, LLC (Filed With SEC on September 13, 2022)

Seventh Amendment, dated June 27, 2022, to Lease, dated August 22, 2007, between registrant and ES East, LLC (Filed With SEC on August 9, 2022)

Fourth Amendment, dated June 27, 2022, to Lease, dated April 25, 2008, between registrant and EmeryStation Triangle, LLC (Filed With SEC on August 9, 2022)

Amendment to Amended and Restated Loan and Security Agreement, dated June 30, 2022, between registrant and Foris Ventures, LLC (Filed With SEC on August 9, 2022)

1st Amendment to the (Filed With SEC on March 9, 2022)

Guaranty of Lease, dated October 13, 2021, by (Filed With SEC on March 9, 2022)

Indenture, dated as of November 15, 2021, by and between Amyris, Inc., and U.S. Bank National Association, as trustee (Filed With SEC on November 15, 2021)

LSA Amendment (Filed With SEC on November 15, 2021)

Amendment to Notes, dated March 1, 2021, between us and DSM Finance, B.V (Filed With SEC on May 7, 2021)

Amendment to Note, dated March 31, 2021, between us and DSM Finance, B.V (Filed With SEC on May 7, 2021)

Asset Purchase Agreement, dated March 31, 2021, between us and DSM Nutritional Products Ltd (Filed With SEC on May 7, 2021)

Amendment No. 5, dated March 31, 2021, to Supply Agreement, dated December 28, 2017, between us and DSM Nutritional Products AG, as assignee of DSM Produtos Nutricionais Brasil S.A (Filed With SEC on May 7, 2021)

Underwriting Agreement, dated April 8, 2021, by and among Amyris, Inc., J.P. Morgan Securities LLC and Cowen and Company, LLC and the selling stockholders of the Company named... (Filed With SEC on April 12, 2021)

Form of Amendment to Warrants to Purchase Shares of Common Stock, dated October 23, 2020, between registrant and certain investors (Filed With SEC on March 5, 2021)

Amendment to Rights Agreement, dated December 11, 2020, between registrant and Foris Ventures, LLC (Filed With SEC on March 5, 2021)

Description of Registrants Securities Registered Under Section 12 of the Exchange Act (Filed With SEC on March 5, 2021)

Fourth Amendment, dated May 7, 2019, to Lease Agreement, dated August 10, 2011, between Amyris Brasil Ltda. And Techno Park Empreendimentos e Administrao Imobiliria Ltda (Filed With SEC on March 5, 2021)

Amendment No. 4, dated December 18, 2020, to Supply Agreement, dated December 18, 2020, between registrant and DSM Nutritional Products AG, as assignee of DSM Produtos... (Filed With SEC on March 5, 2021)

Farnesene Framework Agreement, dated December 18, 2020, between registrant and DSM Nutritional Products Ltd (Filed With SEC on March 5, 2021)

Offer Letter, dated (Filed With SEC on March 5, 2021)

Second Amendment to Promissory Note and Partnership Agreement, dated August 10, 2020, between registrant and Ginkgo Bioworks, Inc (Filed With SEC on November 6, 2020)

Senior Convertible Note Maturity Extension, dated April 6, 2020, between registrant and Total Raffinage Chimie (Filed With SEC on August 10, 2020)

Warrant Amendment Agreement, dated May 1, 2020, between registrant and LMAP Kappa Limited (Filed With SEC on August 10, 2020)

Warrant Amendment Agreement, dated May 1, 2020, between registrant and HT Investments MA LLC (Filed With SEC on August 10, 2020)

Rights Amendment Agreement, dated May 1, 2020, between registrant and Silverback Opportunistic Credit Master Fund Limited (Filed With SEC on August 10, 2020)

Senior Convertible Note Maturity Extension, dated May 7, 2020, between registrant and Total Raffinage Chimie (Filed With SEC on August 10, 2020)

Second Amendment to the Senior Convertible Notes and Waiver and Forbearance Agreement, dated June 4, 2020, between the registrant and HT Investments MA LLC (Filed With SEC on August 10, 2020)

Waiver Agreement and Amendment to Partnership Agreement, dated May 6, 2020 by and between registrant and Ginkgo Bioworks, Inc (Filed With SEC on August 10, 2020)

Second Amendment to Loan Agreement, dated April 3, 2020, between registrant and Nikko Chemicals Co., Ltd (Filed With SEC on August 10, 2020)

Credit Agreement, dated April 29, 2020, between registrant and Foris Ventures, LLC (Filed With SEC on August 10, 2020)

Waiver Agreement and Amendment to Partnership Agreement, dated May 6, 2020 by and between registrant and Ginkgo Bioworks, Inc (Filed With SEC on August 10, 2020)

Third Amendment to Loan Agreement, dated May 7, 2020, between registrant and Nikko Chemicals Co., Ltd (Filed With SEC on August 10, 2020)

Promissory Note dated May 7, 2020, between registrant and Bank of the West (Filed With SEC on August 10, 2020)

SECURITY PURCHASE AGREEMENT (Filed With SEC on June 4, 2020)

AMENDMENT NO 1 TO Amended and Restated Loan And Security Agreement June 1, 2022 (Filed With SEC on June 4, 2020)

Senior Convertible Note Maturity Extension, dated March 11, 2020, between registrant and Total Raffinage Chimie (Filed With SEC on May 11, 2020)

Waiver Agreement and Amendment to Partnership Agreement, dated March 11, 2020 by and between registrant and Ginkgo Bioworks, Inc (Filed With SEC on May 11, 2020)

Amendment to Loan Agreement, dated March 12, 2020, between registrant and Nikko Chemicals Co., Ltd (Filed With SEC on May 11, 2020)

AMENDMENT TO SENIOR CONVERTIBLE NOTE DUE 2022 AND WAIVER AND FORBEARANCE AGREEMENT (Filed With SEC on May 5, 2020)

AMENDMENT TO SENIOR CONVERTIBLE NOTE DUE 2022 AND WAIVER AND FORBEARANCE AGREEMENT (Filed With SEC on May 4, 2020)

Promissory Note issued November 27, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on March 13, 2020)

Common Stock Purchase Warrant issued November 27, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on March 13, 2020)

Description of Registrants Securities Registered Under Section 12 of the Exchange Act (Filed With SEC on March 13, 2020)

Eight Amendment, dated December 9, 2019, to the Private Instrument of Non-Residential Real Estate Lease Agreement, dated March 31, 2008, among Amyris Brasil Ltda., Lucius... (Filed With SEC on March 13, 2020)

Amendment No. 3, dated October 3, 2019, to Supply Agreement, dated December 28, 2017, between registrant and DSM Nutritional Products AG, as assignee of DSM Produtos Nutricionais... (Filed With SEC on March 13, 2020)

Loan Agreement, dated December 19, 2019, between registrant and Nikko Chemicals Co., Ltd (Filed With SEC on March 13, 2020)

WARRANT AMENDMENT AGREEMENT (Filed With SEC on March 3, 2020)

FORBEARANCE AGREEMENT (Filed With SEC on March 3, 2020)

FORM OF WAIVER AND FORBEARANCE AGREEMENT (Filed With SEC on February 19, 2020)

Form of Rights (found at Exhibit A, herein) (Filed With SEC on February 6, 2020)

Form of Foris Warrant Amendment (Filed With SEC on February 6, 2020)

Exercise Agreement (Filed With SEC on February 6, 2020)

Form of Security Purchase Agreement (Filed With SEC on February 6, 2020)

Form of New Note (Filed With SEC on December 30, 2019)

Form of Warrant (Filed With SEC on December 30, 2019)

Form of Exchange Agreement, dated December 30, 2019, by and between the Company and each of the Investors (Filed With SEC on December 30, 2019)

COMMON STOCK PURCHASE WARRANT AMYRIS, INC. (Filed With SEC on November 20, 2019)

CREDIT AND SECURITY AGREEMENT (Filed With SEC on November 20, 2019)

Security Purchase Agreement, dated April 24, 2019, between registrant and ETP BioHealth (I) Fund LP (Filed With SEC on November 13, 2019)

Common Stock Purchase Warrant issued October 11, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 13, 2019)

Promissory Note issued July 10, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Warrant Amendment Agreement, dated July 10, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Senior Convertible Note Maturity Extension, dated July 24, 2019, between registrant and Total Raffinage Chimie (Filed With SEC on November 12, 2019)

Promissory Note issued July 26, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Common Stock Purchase Warrant issued August 14, 2019 by registrant to Naxyris S.A (Filed With SEC on November 12, 2019)

Common Stock Purchase Warrant issued August 14, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Promissory Note issued August 28, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Common Stock Purchase Warrant issued August 28, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Warrant Amendment Agreement, dated August 28, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Senior Convertible Note Maturity Extension, dated September 4, 2019, between registrant and Total Raffinage Chimie (Filed With SEC on November 12, 2019)

Form of Promissory Note issued September 17, 2019, September 19, 2019 and September 23, 2019 by registrant to DSM Finance B.V (Filed With SEC on November 12, 2019)

Credit Agreement, dated July 10, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Loan Agreement, dated July 29, 2019, between registrant and Nikko Chemicals Co., Ltd (Filed With SEC on November 12, 2019)

Credit Agreement, dated August 28, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on November 12, 2019)

Credit Agreement, dated September 17, 2019, between registrant and DSM Finance B.V (Filed With SEC on November 12, 2019)

Form of Senior Convertible Note due 2022 (found at Exhibit A, herein) (Filed With SEC on November 12, 2019)

COMMON STOCK PURCHASE WARRANT AMYRIS, INC. (Filed With SEC on November 1, 2019)

AMENDED AND RESTATED LOAN AND SECURITY AGREEMENT (Filed With SEC on November 1, 2019)

Promissory Note issued April 8, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Securities Purchase Agreement, dated April 15, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Common Stock Purchase Warrant issued April 16, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Warrant Amendment Agreement, dated April 26, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Common Stock Purchase Warrant issued May 10, 2019 by registrant to LMAP KAPPA Limited (Filed With SEC on October 7, 2019)

Common Stock Purchase Warrant issued May 10, 2019 by registrant to Silverback Opportunistic Credit Master Fund Limited (Filed With SEC on October 7, 2019)

Warrant to Purchase Common Stock issued May 14, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Senior Convertible Note issued May 15, 2019 by registrant to Total Raffinage Chimie (Filed With SEC on October 7, 2019)

Senior Convertible Note Maturity Extension, dated June 20, 2019, between registrant and Total Raffinage Chimie (Filed With SEC on October 7, 2019)

Promissory Note issued June 11, 2019 by registrant to Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Amendment No. 2, dated April 16, 2019, to Supply Agreement, dated December 28, 2017 between registrant and DSM Nutritional Products AG, as assignee of DSM Produtos Nutricionais... (Filed With SEC on October 7, 2019)

Lease Agreement, dated May 10, 2019, between Amyris Brotas Fermemtao de Performance Ltda. and Razen Energia S.A (Filed With SEC on October 7, 2019)

Amendment No. 4, dated April 4, 2019, to Loan and Security Agreement, dated June 29, 2018, among registrant, certain of registrants subsidiaries and GACP Finance Co., LLC, as... (Filed With SEC on October 7, 2019)

Credit Agreement, dated April 8, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Loan Purchase Agreement, dated April 15, 2019, among registrant, GACP Finance Co., LLC and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Assignment and Assumption Agreement, dated April 16, 2019, among registrant, DSM Nutritional Products AG and DSM Nutritional Products Europe Ltd (Filed With SEC on October 7, 2019)

Joint Venture Agreement dated May 10, 2019, among registrant, Amyris Brotas Fermentacao de Performance Ltda. and Raizen Energia S.A (Filed With SEC on October 7, 2019)

Exchange Agreement, dated May 10, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Exchange Agreement, dated May 10, 2019, among registrant and Silverback Asset Management, LLC (Filed With SEC on October 7, 2019)

Exchange Agreement, dated May 13, 2019, between registrant and Maxwell (Mauritius) Pte Ltd (Filed With SEC on October 7, 2019)

Exchange Agreement, dated May 15, 2019, between registrant and Total Raffinage Chimie (Filed With SEC on October 7, 2019)

Credit Agreement, dated June 11, 2019, between registrant and Foris Ventures, LLC (Filed With SEC on October 7, 2019)

Consulting Agreement, dated May 28, 2019, between registrant and FLG Partners, LLC (Filed With SEC on October 7, 2019)

Description of Capital Stock (Filed With SEC on October 1, 2019)

Amendment No. 2, dated November 14, 2018, to Loan and Security Agreement, dated June 29, 2018, among registrant, certain of registrants subsidiaries and GACP Finance Co., LLC, as... (Filed With SEC on October 1, 2019)

Amendment No. 3, dated December 14, 2018, to Loan and Security Agreement, dated June 29, 2018, among registrant, certain of registrants subsidiaries and GACP Finance Co., LLC, as... (Filed With SEC on October 1, 2019)

Supply Agreement, dated December 28, 2017, between registrant and DSM Produtos Nutricionais Brasil S.A (Filed With SEC on October 1, 2019)

Amendment No. 1, dated November 19, 2018, to Supply Agreement, dated December 28, 2017, between registrant and DSM Nutritional Products AG, as assignee of DSM Produtos... (Filed With SEC on October 1, 2019)

Assignment Agreement, dated December 31, 2018, between registrant and Hangzhou Xinfu Science & Tech Co. Ltd (Filed With SEC on October 1, 2019)

Registrants 2018 Cash Bonus Plan (Filed With SEC on October 1, 2019)

COMMON STOCK PURCHASE WARRANT AMYRIS, INC. (Filed With SEC on September 11, 2019)

CREDIT AGREEMENT (Filed With SEC on September 11, 2019)

STANDSTILL AGREEMENT (Filed With SEC on September 11, 2019)

LOAN AND SECURITY AGREEMENT (Filed With SEC on August 20, 2019)

AMENDMENT NO 5 TO LOAN AGREEMENT AND WAIVER August 14, 2019 (Filed With SEC on August 20, 2019)

Form of New Note (found at Exhibit A, herein) (Filed With SEC on July 25, 2019)

Form of Warrant (found at Exhibit A, herein) (Filed With SEC on July 9, 2019)

Form of New Note (found at Exhibit A, herein) (Filed With SEC on June 28, 2019)

Form of New Note (found at Exhibit A, herein) (Filed With SEC on May 16, 2019)

Form of Warrant (found at Exhibit A, herein) (Filed With SEC on April 30, 2019)

Exchange Agreement, dated December 31, 2018, by and between the Company and Wolverine Flagship Fund Trading Limited (Filed With SEC on January 2, 2019)

Form of Senior Convertible Note (found at Exhibit A, herein) (Filed With SEC on December 7, 2018)

Securities Purchase Agreement, dated November 19, 2018, by and between the Company and DSM International B.V (Filed With SEC on November 26, 2018)

Letter Agreement, dated November 19, 2018, by and between the Company and DSM Nutritional Products Ltd (Filed With SEC on November 26, 2018)

Amendment, dated August 17, 2018, to Common Stock Purchase Warrant issued May 11, 2017 by registrant to Foris Ventures, LLC (Filed With SEC on November 15, 2018)

Amendment, dated August 17, 2018, to Common Stock Purchase Warrant issued August 3, 2017 by registrant to Vivo Capital Fund VIII, L.P (Filed With SEC on November 15, 2018)

Amendment, dated August 17, 2018, to Common Stock Purchase Warrant issued August 3, 2017 by registrant to Vivo Capital Surplus Fund VIII, L.P (Filed With SEC on November 15, 2018)

Common Stock Purchase Warrant issued August 20, 2018 by registrant to Vivo Capital Fund VIII, L.P (Filed With SEC on November 15, 2018)

Common Stock Purchase Warrant issued August 20, 2018 by registrant to Vivo Capital Surplus Fund VIII, L.P (Filed With SEC on November 15, 2018)

Amendment No. 1, dated August 24, 2018, to the Loan and Security Agreement, dated June 29, 2018, by and among registrant, certain of registrants subsidiaries and GACP Finance Co.,... (Filed With SEC on November 15, 2018)

Underwriting Agreement, dated August 17, 2018, by and among Amyris, Inc., B. Riley FBR, Inc., Foris Ventures, LLC, Vivo Capital Fund VIII, L.P. and Vivo Capital Surplus Fund VIII,... (Filed With SEC on August 24, 2018)

Common Stock Purchase Warrant issued August 17, 2018 by the Company to Foris Ventures, LLC (Filed With SEC on August 20, 2018)

Common Stock Purchase Warrant issued August 17, 2018 by the Company to Vivo Capital Fund VIII, L.P (Filed With SEC on August 20, 2018)

Common Stock Purchase Warrant issued August 17, 2018 by the Company to Vivo Capital Surplus Fund VIII, L.P (Filed With SEC on August 20, 2018)

Warrant Exercise Agreement, dated August 17, 2018, between the Company and Foris Ventures, LLC (Filed With SEC on August 20, 2018)

Warrant Exercise Agreement, dated August 17, 2018, between the Company and Vivo Capital Fund VIII, L.P (Filed With SEC on August 20, 2018)

Warrant Exercise Agreement, dated August 17, 2018, between the Company and Vivo Capital Surplus Fund VIII, L.P (Filed With SEC on August 20, 2018)

Eighth Amendment, dated May 30, 2018, to Loan and Security Agreement, dated March 29, 2014, between registrant and Stegodon Corporation, as assignee of Hercules Capital, Inc (Filed With SEC on August 14, 2018)

Fourth Amendment, dated May 31, 2018, to 12% Senior Convertible Note issued March 21, 2016 (RS-10) by registrant to Total Energies Nouvelles Activits USA (Filed With SEC on August 14, 2018)

2010 Employee Stock Purchase Plan, as amended, and form of subscription agreement thereunder (Filed With SEC on August 14, 2018)

Performance Stock Option Award Agreement, dated May 29, 2018, between the registrant and John Melo (Filed With SEC on August 14, 2018)

Amendment #1, dated May 30, 2018, to Executive Severance Plan Participation Agreement, dated December 18, 2013, between the registrant and John Melo (Filed With SEC on August 14, 2018)

Loan and Security Agreement, dated as of June 29, 2018, by and among the Company, the Subsidiary Guarantors and GACP Finance Co., LLC, as administrative agent and lender (Filed With SEC on July 2, 2018)

Third Amendment, dated March 30, 2018, to 1.5% Senior Convertible Note issued March 21, 2016 (RS-10) by registrant to Total Energies Nouvelles Activits USA (Filed With SEC on May 18, 2018)

Seventh Amendment, dated March 30, 2018, to Loan and Security Agreement, dated March 29, 2014, between registrant and Stegodon Corporation, as assignee of Hercules Capital, Inc (Filed With SEC on May 18, 2018)

Amendment No. 1, dated December 28, 2017, to the Quota Purchase Agreement, dated November 17, 2017, among registrant, AB Technologies LLC and DSM Produtos Nutricionais Brasil S.A (Filed With SEC on April 17, 2018)

Sixth Amendment, dated December 28, 2017, to Loan and Security Agreement, dated March 29, 2014, between registrant and Stegodon Corporation, as assignee of Hercules Capital, Inc (Filed With SEC on April 17, 2018)

Second Amendment, dated November 13, 2017, to the Unsecured Promissory Note issued February 12, 2016 by registrant to Biolding Investment SA (Filed With SEC on April 17, 2018)

Promissory Note issued November 13, 2017 by registrant to Ginkgo Bioworks, Inc (Filed With SEC on April 17, 2018)

Note issued December 28, 2017 by registrant to DSM Finance BV (Filed With SEC on April 17, 2018)

Lease Agreement, dated May 1, 2010, between So Martinho S/A and SMA Industria Quimca S/A (Filed With SEC on April 17, 2018)

Amendment No. 2, dated August 31, 2015, to the Lease Agreement, dated May 1, 2010, between So Martinho S/A, SMA Industria Quimca (Filed With SEC on April 17, 2018)

Amendment No. 3, dated September 1, 2016, to the Lease Agreement, dated May 1, 2010, between So Martinho S/A, SMA Industria Quimca Ltda. (f.k.a. SMA Indstria Qumica S.A.) (Filed With SEC on April 17, 2018)

Amendment No. 4, dated December 26, 2017, to the Lease Agreement, , dated May 1, 2010, between So Martinho S/A, SMA Industria Quimca, Ltda (Filed With SEC on April 17, 2018)

Partnership Agreement, dated October 20, 2017, between registrant and Ginkgo Bioworks, Inc (Filed With SEC on April 17, 2018)

Credit Agreement, dated December 28, 2017, between registrant and DSM Finance BV (Filed With SEC on April 17, 2018)

Amendment, dated March 6, 2017, to Offer Letter, dated November 23, 2016, between registrant and Kathleen Valiasek (Filed With SEC on April 17, 2018)

Offer Letter, dated June 5, 2017, between registrant and Nicole Kelsey (Filed With SEC on April 17, 2018)

Amendment, dated September 18, 2017, to Offer Letter, dated June 5, 2017, between registrant and Nicole Kelsey (Filed With SEC on April 17, 2018)

Offer Letter, dated October 5, 2017, between registrant and Eduardo Alvarez (Filed With SEC on April 17, 2018)

Compensation arrangements between registrant and its non-employee directors (Filed With SEC on April 17, 2018)

Compensation arrangements between registrant and its executive officers (Filed With SEC on April 17, 2018)

Form of New Warrant (Filed With SEC on April 12, 2018)

Form of Warrant Exercise Agreement (Filed With SEC on April 12, 2018)

Form of Leak-Out Agreement (Filed With SEC on April 12, 2018)

Quota Purchase Agreement, dated as of November 17, 2017, among the Company, AB Technologies LLC, and DSM Produtos Nutricionais Brasil S.A (Filed With SEC on November 24, 2017)

Amended and Restated Stockholder Agreement, dated August 7, 2017, between registrant and DSM International B.V (Filed With SEC on November 20, 2017)

Seventh Amendment, dated September 25, 2017, to the Private Instrument of Non-Residential Real Estate Lease Agreement, by and among Amyris Brasil Ltda., Lucius Tomasiello and... (Filed With SEC on November 20, 2017)

Second Amendment, dated May 15, 2017, to 1.5% Senior Convertible Note, dated March 21, 2016 (RS-10) issued by registrant to Total Energies Nouvelles Activits USA (Filed With SEC on August 14, 2017)

Letter Agreement, dated May 4, 2017, between registrant and Maxwell (Mauritius) Pte Ltd (Filed With SEC on August 14, 2017)

Letter Agreement, dated May 12, 2017, between registrant and Total Raffinage Chimie S.A (Filed With SEC on August 14, 2017)

First Amendment, dated May 15, 2017, to the Unsecured Promissory Note, dated February 12, 2016, issued to Biolding Investment S.A (Filed With SEC on August 14, 2017)

Secured Promissory Note , dated April 13, 2017, issued by registrant to Ginkgo Bioworks, Inc (Filed With SEC on August 14, 2017)

Voting Agreement, dated May 4, 2017, between registrant and Total Raffinage Chimie (Filed With SEC on August 14, 2017)

Voting Agreement, dated May 5, 2017, between registrant and Maxwell (Mauritius) Pte Ltd (Filed With SEC on August 14, 2017)

Voting Agreement, dated May 8, 2017, between registrant and the investors listed therein (Filed With SEC on August 14, 2017)

Form of Cash Warrant (Filed With SEC on August 14, 2017)

Form of Dilution Warrant (Filed With SEC on August 14, 2017)

Stockholder Agreement, dated May 11, 2017, between registrant and DSM International B.V (Filed With SEC on August 14, 2017)

Modification No. 4, dated June 29, 2016, to the Technology Investment Agreement, dated September 22, 2015, between registrant and The Defense Advanced Research Projects Agency... (Filed With SEC on August 14, 2017)

Letter Agreement, dated April 23, 2017, terminating Cooperation Agreement, dated October 26, 2016, between registrant and Nenter & Co., Inc (Filed With SEC on August 14, 2017)

Amendment, dated May 9, 2017, to Engagement Letter, dated as of April 18, 2017, by and between the Company and Rodman & Renshaw, a unit of H.C. Wainwright & Co., LLC (Filed With SEC on August 14, 2017)

Amendment No.1, dated May 30, 2017, to Securities Purchase Agreement, dated May 8, 2017 (Filed With SEC on August 14, 2017)

AMYRIS, INC. a Delaware Corporation (Filed With SEC on August 3, 2017)

SECURITIESPURCHASE AGREEMENT (Filed With SEC on August 3, 2017)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on August 3, 2017)

FIRST AMENDMENT TO 1.5% SENIOR CONVERTIBLE NOTE (RS-10) (Filed With SEC on May 15, 2017)

FIRST SUPPLEMENTAL INDENTURE (Filed With SEC on May 15, 2017)

AMYRIS, INC. 9.50% Convertible Senior Notes due 2019 (Filed With SEC on May 15, 2017)

SECTION ONE PRICE (Filed With SEC on May 15, 2017)

TECHNOLOGY INVESTMENT AGREEMENT BETWEEN AMYRIS, INC., 5885 HOLLIS STREET SUITE 100 EMERYVILLE, CALIFORNIA 94608 AND THE DEFENSE ADVANCED RESEARCH PROJECTS AGENCY 675 NORTH... (Filed With SEC on May 15, 2017)

FIRST AMENDMENT TO THE AMENDED AND RESTATED JET FUEL LICENSE AGREEMENT (Filed With SEC on May 15, 2017)

FIRST AMENDMENT TO LICENSE AGREEMENT REGARDING DIESEL FUEL INTHE EU (Filed With SEC on May 15, 2017)

AMENDMENT NUMBER ONE TO THE AMYRIS, INC. 2010 EMPLOYEE STOCK PURCHASEPLAN (Filed With SEC on May 15, 2017)

AMENDMENT #2 TO THE SECOND AMENDMENT TO THE TECHNOLOGY, LICENSE, DEVELOPMENT, RESEARCH AND COLLABORATIONAGREEMENT (Filed With SEC on May 15, 2017)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 15, 2017)

EXHIBIT A EXECUTIVE SEVERANCE PLAN (Filed With SEC on May 15, 2017)

FORMOF SECURITIES PURCHASE AGREEMENT (Filed With SEC on May 8, 2017)

430 Park Avenue | New York, New York 10022 | 212 ###-###-#### Security services provided by H.C. Wainwright & Co., LLC | Member:FINRA/SIPC (Filed With SEC on May 8, 2017)

Form of Security HolderAgreement (Filed With SEC on May 8, 2017)

Form of Amendment Agreement (Filed With SEC on May 8, 2017)

Exchange Agreement (Filed With SEC on April 17, 2017)

[REMAINDER OF THIS PAGE INTENTIONALLY LEFT BLANK] (Filed With SEC on April 17, 2017)

Note pUrchase AGREEMENT (Filed With SEC on April 17, 2017)

SECURED PROMISSORYNOTE (Filed With SEC on April 17, 2017)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 17, 2017)

AMYRIS, INC. NOTE (Filed With SEC on April 17, 2017)

Note pUrchase AGREEMENT (Filed With SEC on April 17, 2017)

SECURED PROMISSORYNOTE (Filed With SEC on April 17, 2017)

PURCHASE MONEY PROMISSORY NOTE (Filed With SEC on April 17, 2017)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 17, 2017)

TERMINATION AGREEMENT REGARDING THE AMENDED ANDRESTATED MASTER FRAMEWORK AGREEMENT (Filed With SEC on April 17, 2017)

Fifth Addendum to the Private LeaseContract Instrument for Nonresidential Property (Filed With SEC on April 17, 2017)

Sixth Addendum to the Private LeaseContract Instrument for Nonresidential Property (Filed With SEC on April 17, 2017)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 17, 2017)

PURCHASE AND SALE AGREEMENT BY AND AMONG SALISBURY PARTNERS, LLC, GLYCOTECH, INC. AND AMYRIS, INC. NOVEMBER 10, 2016 (Filed With SEC on April 17, 2017)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 17, 2017)

Description of Non-Employee Director Compensation Arrangements (Filed With SEC on April 17, 2017)

Description of Executive Officer Compensation Arrangements (Filed With SEC on April 17, 2017)

FORM OF SECURITIES PURCHASE AGREEMENT (Filed With SEC on April 17, 2017)

FORM OF SECURITIES PURCHASE AGREEMENT (Filed With SEC on December 2, 2016)

WARRANTTO PURCHASE COMMON STOCK (Filed With SEC on November 9, 2016)

FIRST ADDENDUM TO THE SHARE PURCHASEAND SALE AGREEMENT of SMA INDÚSTRIA QUÍMICA LTDA. entered into by and among, on one side, SÃO MARTINHO S.A. as Seller and, on the other... (Filed With SEC on November 9, 2016)

SECOND AMENDED AND RESTATED OPERATING AGREEMENT OF Novvi LLC by and among Amyris, Inc., Cosan US, Inc., American Refining Group, Inc. and Novvi LLC dated as of July 19, 2016 (Filed With SEC on November 9, 2016)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on November 9, 2016)

[FORM OF ADDITIONAL NOTE] (Filed With SEC on September 9, 2016)

NOTE PURCHASE AGREEMENT (Filed With SEC on August 9, 2016)

SECURED PROMISSORY NOTE (Filed With SEC on August 9, 2016)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on August 9, 2016)

[Signature Page Follows] (Filed With SEC on August 9, 2016)

INITIAL STRATEGIC PARTNERSHIP AGREEMENT (Filed With SEC on August 9, 2016)

1.5% SENIOR CONVERTIBLE NOTE (Filed With SEC on May 10, 2016)

Note and warrant pUrchaseAGREEMENT (Filed With SEC on May 10, 2016)

UNSECURED PROMISSORYNOTE (Filed With SEC on May 10, 2016)

WARRANT TO PURCHASE STOCK (Filed With SEC on May 10, 2016)

Total Energies Nouvelles Activités USA 24 Cours Michelet 92800 Puteaux France February 11 2016 (Filed With SEC on May 10, 2016)

AMENDED AND RESTATED SHAREHOLDERS’ AGREEMENT by and among TOTAL ENERGIES NOUVELLES ACTIVITES USA, AMYRIS, INC. and TOTAL AMYRIS BIOSOLUTIONS B.V. Dated as of March 21, 2016 (Filed With SEC on May 10, 2016)

AMENDED & RESTATED JET FUEL LICENSE AGREEMENT (Filed With SEC on May 10, 2016)

LICENSE AGREEMENT REGARDING DIESEL FUEL IN THEEU (Filed With SEC on May 10, 2016)

Amendment #1 to IP LICENSEAGREEMENT (Filed With SEC on May 10, 2016)

SECOND ADDENDUM TO THE PROPERTY LEASEAGREEMENT (Filed With SEC on May 10, 2016)

THIRD AMENDMENT TO THE PROPERTY LEASE AGREEMENT (Filed With SEC on May 10, 2016)

[FORM OF CONVERTIBLE NOTE] (Filed With SEC on May 10, 2016)

FORM OF SECURITIES PURCHASE AGREEMENT (Filed With SEC on May 10, 2016)

THIRD AMENDMENT TO LOAN AND SECURITY AGREEMENT (Filed With SEC on March 30, 2016)

AMYRIS, INC. 9.5% Convertible Senior Notes due 2019 (Filed With SEC on March 30, 2016)

ANNEX II -NOTE optionsLAUNCH ("NLO") (Filed With SEC on March 30, 2016)

TERMINATION AGREEMENT (Filed With SEC on March 30, 2016)

SHARE PURCHASE AND SALE AGREEMENT of SMA INDÚSTRIA QUÍMICA S.A. entered into by and among, on one side, SÃO MARTINHO S.A. as Seller and, on the other side, AMYRIS BRASIL LTDA.... (Filed With SEC on March 30, 2016)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTEDPURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on March 30, 2016)

SECONDADDENDUM to the CONTRACT for the SUPPLY of sugar cane JUICE and OTHER UTILITIES; (Filed With SEC on March 30, 2016)

REPURCHASE AGREEMENT (Filed With SEC on March 30, 2016)

AMYRIS, INC. CONSULTING AGREEMENT (Filed With SEC on March 30, 2016)

Description of Non-Employee Director CompensationArrangements (Filed With SEC on March 30, 2016)

AMYRIS, INC. Common Stock (par value $0.0001 per share) At Market Issuance Sales Agreement (Filed With SEC on March 9, 2016)

1.5% SENIOR SECURED CONVERTIBLE NOTE (Filed With SEC on November 9, 2015)

VOTING AGREEMENT (Filed With SEC on November 9, 2015)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on November 9, 2015)

EXCHANGE AGREEMENT (Filed With SEC on November 9, 2015)

Maturity Treatment Agreement (Filed With SEC on November 9, 2015)

AMYRIS, INC. as Issuer AND Wells Fargo Bank, National Association as Trustee ___________________ Indenture Dated as of October 20, 2015 ___________________ 9.50% Convertible... (Filed With SEC on October 20, 2015)

REGISTRATION RIGHTS AGREEMENT (Filed With SEC on October 20, 2015)

AMENDMENT #1 TO THE AMENDED AND RESTATED MASTER FRAMEWORK AGREEMENT (Filed With SEC on August 10, 2015)

CONFIDENTIALTREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND,WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 10, 2015)

AMYRIS, INC. EXECUTIVE SEVERANCE PLAN (Filed With SEC on August 10, 2015)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 7, 2015)

Second Amendment to Loan and Security Agreement (Filed With SEC on May 7, 2015)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 7, 2015)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on March 31, 2015)

MODIFICATION TO TECHNOLOGY INVESTMENT AGREEMENT BETWEEN AMYRIS, INC., 5885 HOLLIS STREET SUITE 100 EMERYVILLE, CALIFORNIA 94608 AND THE DEFENSE ADVANCED RESEARCH PROJECTS AGENCY... (Filed With SEC on March 31, 2015)

REGISTRATION RIGHTS AGREEMENT (Filed With SEC on February 26, 2015)

COMMON STOCK PURCHASE AGREEMENT Dated as of February 24, 2015 by and between AMYRIS, INC. and NOMIS BAY LTD. TABLE OF CONTENTS (Filed With SEC on February 26, 2015)

Re:Engagement of Reedland Capital Partners, an Institutional Division of Financial West Group as Placement Agent for Amyris, Inc. (Filed With SEC on February 26, 2015)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on November 7, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 8, 2014)

AMYRIS, INC. 6.50% Convertible Senior Notes due 2019 (Filed With SEC on August 8, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 8, 2014)

FIRST AMENDMENT TO LOAN AND SECURITY AGREEMENT AND NOTE MODIFICATION (Filed With SEC on August 8, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 8, 2014)

AMYRIS, INC. as Issuer AND Wells Fargo Bank, National Association as Trustee (Filed With SEC on May 29, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 9, 2014)

MARCH 2014 LETTER AGREEMENT Total Energies Nouvelles Activits USA 24 Cours Michelet 92800 Puteaux France March 29, 2014 (Filed With SEC on May 9, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 9, 2014)

AMYRIS, INC. AMENDMENT NO. 2 TO AMENDED AND RESTATED INVESTORS' RIGHTS AGREEMENT (Filed With SEC on April 2, 2014)

AMYRIS, INC. AMENDMENT NO. 4 TO AMENDED AND RESTATED INVESTORS RIGHTS AGREEMENT (Filed With SEC on April 2, 2014)

AMYRIS, INC. AMENDMENT NO. 5 TO AMENDED AND RESTATED INVESTORS RIGHTS AGREEMENT (Filed With SEC on April 2, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 2, 2014)

Schedule A (see Exhibit 4.02 Quarterly Report on Form 10-Q as filed on November 9, 2012) Notes Issued by Registrant Note NumberDate of NoteAmountConversion PriceCommentsR-1July... (Filed With SEC on April 2, 2014)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on April 2, 2014)

FOLLOW-ON INVESTMENT AGREEMENT (Filed With SEC on April 2, 2014)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on April 2, 2014)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on November 5, 2013)

VOTING AGREEMENT (Filed With SEC on November 5, 2013)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on November 5, 2013)

FIRST AMENDMENT TO THE LEASE AGREEMENT (Filed With SEC on November 5, 2013)

1.5% SENIOR UNSECURED CONVERTIBLE NOTE (Filed With SEC on August 9, 2013)

SIXTH AMENDMENT TO LEASE BETWEEN ES EAST, LLC (LANDLORD) AND AMYRIS, INC. (TENANT) AT EMERYSTATION EAST 5885 HOLLIS STREET, EMERYVILLE, CA (Filed With SEC on August 9, 2013)

THIRD AMENDMENT TO LEASE BETWEEN EMERY STATION TRIANGLE, LLC (LANDLORD) AND AMYRIS, INC. (TENANT) AT 5850 HOLLIS STREET, EMERYVILLE, CA (Filed With SEC on August 9, 2013)

SETTLEMENT AGREEMENT, TERMINATION AGREEMENT AND MUTUAL RELEASE (Filed With SEC on August 9, 2013)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on May 9, 2013)

AMYRIS, INC. AMENDMENT NO. 3 TO AMENDED AND RESTATED INVESTORS' RIGHTS AGREEMENT (Filed With SEC on May 9, 2013)

Collaboration Agreement (Filed With SEC on May 9, 2013)

Total Gas & Power USA 24, place Jean Millier 92078 Courbevoie France March 24, 2013 (Filed With SEC on May 9, 2013)

AMENDED AND RESTATED OPERATING AGREEMENT OF Novvi LLC by and among Amyris, Inc., Cosan US, Inc. and Novvi LLC dated as of March 26, 2013 Table of Contents Contents ARTICLEI... (Filed With SEC on May 9, 2013)

TERMINATION OF THE JOINT VENTURE IMPLEMENTATION AGREEMENT (Filed With SEC on May 9, 2013)

IP License Agreement (Filed With SEC on May 9, 2013)

AMYRIS, INC. AMENDMENT NO. 2 TO AMENDED AND RESTATED INVESTORS' RIGHTS AGREEMENT (Filed With SEC on March 28, 2013)

Schedule A (see Exhibit 4.02 Quarterly Report on Form 10-Q as filed on November 9, 2012) Notes Issued by Registrant Note NumberDate of NoteAmountConversion PriceCommentsR-1July... (Filed With SEC on March 28, 2013)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on March 28, 2013)

FOLLOW-ON INVESTMENT AGREEMENT (Filed With SEC on March 28, 2013)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on November 9, 2012)

1.5% SENIOR UNSECURED CONVERTIBLE NOTE (Filed With SEC on November 9, 2012)

REGISTRATION RIGHTS AGREEMENT (Filed With SEC on November 9, 2012)

CORPORATE GUARANTEE (Amyris) (Filed With SEC on November 9, 2012)

MASTER FRAMEWORK AGREEMENT (Filed With SEC on November 9, 2012)

SECOND AMENDMENT TO THE TECHNOLOGY LICENSE, DEVELOPMENT, RESEARCH AND COLLABORATION AGREEMENT (Filed With SEC on November 9, 2012)

COMMON STOCK PURCHASE AGREEMENT (Filed With SEC on August 8, 2012)

[Remainder of page left intentionally blank] (Filed With SEC on August 8, 2012)

BANK OF THE WEST May 3, 2012 (Filed With SEC on August 8, 2012)

TECHNOLOGY INVESTMENT AGREEMENT BETWEEN AMYRIS, INC., 5885 HOLLIS STREET SUITE 100 EMERYVILLE, CALIFORNIA 94608 AND THE DEFENSE ADVANCED RESEARCH PROJECTS AGENCY 675 NORTH... (Filed With SEC on August 8, 2012)

Exhibit A RELEASE (Filed With SEC on August 8, 2012)

SECURITIES PURCHASE AGREEMENT (Filed With SEC on May 9, 2012)

AGREEMENT FOR THE SUPPLY OF SUGARCANE JUICE AND OTHER UTILITIES (Filed With SEC on May 9, 2012)

WARRANT TO PURCHASE STOCK (Filed With SEC on February 28, 2012)

CORPORATE GUARANTEE (Amyris) (Filed With SEC on February 28, 2012)

BANK OF THE WEST December 23, 2010 (Filed With SEC on February 28, 2012)

FIRST AMENDMENT TO THE TECHNOLOGY LICENSE, DEVELOPMENT, RESEARCH AND COLLABORATION AGREEMENT ENTERED INTO AS OF NOVEMBER 23, 2011 (Filed With SEC on February 28, 2012)

Lease Agreement for the ground floor and first floor side B Building 3 Techno Plaza LEASE AGREEMENT (Filed With SEC on February 28, 2012)

AMYRIS, INC. 2005 STOCK OPTION/STOCK ISSUANCE PLAN ARTICLE ONE GENERAL PROVISIONS (Filed With SEC on November 9, 2011)

TOTAL GAS & POWER USA BIOTECH, INC 1201, Louisiana, Suite 1600,Houston, Texas 77002, United States of America (Filed With SEC on May 11, 2011)

FIFTH AMENDMENT TO LEASE BETWEEN ES EAST, LLC (LANDLORD) AND AMYRIS, INC. (TENANT) AT EMERYSTATION EAST 5885 HOLLIS STREET, EMERYVILLE, CA (Filed With SEC on March 14, 2011)

AMYRIS, INC. 2010 EMPLOYEE STOCK PURCHASE PLAN (Filed With SEC on September 20, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on September 20, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 31, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENTAND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on August 31, 2010)

Shares AMYRIS, INC. COMMON STOCK, PAR VALUE $0.0001 PER SHARE UNDERWRITING AGREEMENT (Filed With SEC on August 17, 2010)

ATEL VENTURES, INC. MASTER LOAN AND SECURITY AGREEMENT NO. AMYRX Dated as of JUNE 1, 2010 (Filed With SEC on August 17, 2010)

Additional abbreviations mayalso be used though not in above list. (Filed With SEC on July 6, 2010)

FIRST AMENDMENT TO THE INVESTMENT AGREEMENT ENTERED INTO BY AND AMONG FUNDO MÚTUO DEINVESTIMENTO EM EMPRESAS EMERGENTES INOVADORAS STRATUS GC III, AMYRIS BIOTECHNOLOGIES, INC.,... (Filed With SEC on July 6, 2010)

AMYRIS, INC. 2010 EMPLOYEE STOCK PURCHASE PLAN (Filed With SEC on July 6, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on June 28, 2010)

AMYRIS BIOTECHNOLOGIES, INC. STOCK OPTION AGREEMENT (Filed With SEC on June 28, 2010)

AMYRIS, INC. AMENDED AND RESTATED INVESTORS RIGHTS AGREEMENT (Filed With SEC on June 23, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on June 23, 2010)

AGREEMENT BY FUNDO MUTUODE INVESTIMENTO EM EMPRESAS EMERGENTES INOVADORAS STRATUS GC III. AMYRIS BIOTECHNOLOGIES. INC., AMYRIS BRASIL S.A. AND, AS INTERVENING PARTY, STRATUS... (Filed With SEC on June 23, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on June 23, 2010)

AMENDMENT AND RESTATEMENT TO THE SHAREHOLDERS AGREEMENT BY FUNDOMÚTUO DE INVESTIMENTOS EM EMPRESAS EMERGENTES INOVADORAS STRATUS GC III, RED MOUNTAIN JET LLC, AMYRIS... (Filed With SEC on June 23, 2010)

AMYRIS, INC. SERIES D PREFERRED STOCK PURCHASE AGREEMENT AMYRIS, INC. SERIES D PREFERRED STOCK PURCHASE AGREEMENT (Filed With SEC on June 23, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on June 23, 2010)

INDEMNITY AGREEMENT (Filed With SEC on June 23, 2010)

AMYRIS BIOTECHNOLOGIES, INC. 2010 EQUITY INCENTIVE PLAN (Filed With SEC on June 23, 2010)

AMYRIS BIOTECHNOLOGIES, INC. 2010 EMPLOYEE STOCK PURCHASE PLAN (Filed With SEC on June 23, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 25, 2010)

NOT SPECIFIED /OTHER (Filed With SEC on May 25, 2010)

CONFIDENTIAL TREATMENT REQUESTED. CERTAIN PORTIONS OF THIS DOCUMENT HAVE BEEN OMITTED PURSUANT TO A REQUEST FOR CONFIDENTIAL TREATMENT AND, WHERE APPLICABLE, HAVE BEEN MARKED WITH... (Filed With SEC on May 25, 2010)

AMYRIS BIOTECHNOLOGIES, INC. AMENDED AND RESTATED INVESTORS RIGHTS AGREEMENT (Filed With SEC on April 16, 2010)

WARRANT TO PURCHASE SERIES B-1 PREFERRED STOCK OF AMYRIS BIOTECHNOLOGIES, INC. (Filed With SEC on April 16, 2010)

WARRANT TO PURCHASE SERIES C PREFERRED STOCK OF AMYRIS BIOTECHNOLOGIES, INC. (Filed With SEC on April 16, 2010)

[Insert Amyris Letterhead] April 8, 2010 (Filed With SEC on April 16, 2010)

STOCKPURCHASE WARRANT (Filed With SEC on April 16, 2010)

AMENDMENT NO. 1 TO STOCK PURCHASE WARRANT (Filed With SEC on April 16, 2010)

STOCK PURCHASE WARRANT (Filed With SEC on April 16, 2010)

AMENDMENT NO. 1 TO STOCK PURCHASE WARRANT (Filed With SEC on April 16, 2010)

AMENDED AND RESTATEDPLAIN ENGLISH WARRANT AGREEMENT (Filed With SEC on April 16, 2010)

AMENDMENT NO.1 TO AMENDED AND RESTATED PLAIN ENGLISH WARRANT AGREEMENT (Filed With SEC on April 16, 2010)

PLAIN ENGLISH WARRANTAGREEMENT (Filed With SEC on April 16, 2010)

AMENDMENT NO. 1 TO PLAIN ENGLISH WARRANT AGREEMENT (Filed With SEC on April 16, 2010)

PLAIN ENGLISH MASTER LEASE AGREEMENT (Filed With SEC on April 16, 2010)

1 FIRST AMENDMENT TO PLAINENGLISH MASTER LEASE AGREEMENT (Filed With SEC on April 16, 2010)

REIMBURSEMENT AND SECURITY AGREEMENT Dated as of November 5, 2009 between AMYRIS BIOTECHNOLOGIES, INC. and BANK OFTHE WEST TABLE OF CONTENTS (Filed With SEC on April 16, 2010)

FIRST AMENDMENT TO REIMBURSEMENT AND SECURITY AGREEMENT AND TO SUPPORT AGREEMENT (Filed With SEC on April 16, 2010)

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