AFFYMETRIX INC Contracts & Agreements

AFFYMETRIX, INC., AS ISSUER and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A., AS TRUSTEE Second Supplemental Indenture Dated as of March 31, 2016 to the Indenture Dated as of... (Filed With SEC on March 31, 2016)

AGREEMENT AND PLAN OF MERGER dated as of January 8, 2016 among AFFYMETRIX, INC., THERMO FISHER SCIENTIFIC INC. and WHITE BIRCH MERGER CO. TABLE OF CONTENTS (Filed With SEC on January 14, 2016)

CHANGEOF CONTROL PLAN EFFECTIVE JANUARY1, 2016 (Filed With SEC on November 10, 2015)

EXECUTIVE SEVERANCE POLICY (Amended and Effective as of November 5, 2015) (Filed With SEC on November 10, 2015)

SCHEDULE 1 RATE SCHEDULE SINGAPORE DOLLARS (Filed With SEC on October 29, 2015)

CREDIT AGREEMENT Dated as of October 28, 2015 among AFFYMETRIX, INC., as the Borrower, CERTAIN SUBSIDIARIES OF THE BORROWER PARTYHERETO, as the Guarantors, BANK OF AMERICA, N.A.,... (Filed With SEC on October 29, 2015)

AFFYMETRIX, INC. Shares of Common Stock (par value$0.01 per share) Controlled Equity OfferingSM Sales Agreement (Filed With SEC on November 19, 2014)

ADDENDUM 26101 Miles Road, Warrensville Heights, Ohio 44128 (Filed With SEC on October 30, 2014)

ADDENDUM 26111 Miles Road, Warrensville Heights, Ohio 44128 (Filed With SEC on October 30, 2014)

LIMITED WAIVER AND FIFTH AMENDMENT TO CREDIT AGREEMENT (Filed With SEC on August 4, 2014)

LEASE by and between BMR-10255 SCIENCE CENTER LP, a Delaware limited partnership and AFFYMETRIX, INC., a Delaware corporation (Filed With SEC on June 25, 2014)

LEASE by and between BMR-10240 SCIENCE CENTER DRIVE LP, a Delaware limited partnership and AFFYMETRIX, INC., a Delaware corporation (Filed With SEC on June 25, 2014)

FOURTH AMENDMENT TO CREDIT AGREEMENT (Filed With SEC on October 21, 2013)

THIRD AMENDMENT AND LIMITED WAIVER TO CREDIT AGREEMENT (Filed With SEC on May 1, 2013)

CONSULTING AGREEMENT (Filed With SEC on May 1, 2013)

AFFYMETRIX, INC. NON-QUALIFIED STOCK OPTION GRANT NOTICE AND AGREEMENT (Filed With SEC on March 4, 2013)

AFFYMETRIX, INC. RESTRICTED STOCK UNIT GRANT NOTICE AND AGREEMENT (Filed With SEC on March 4, 2013)

AFFYMETRIX, INC. PERFORMANCE BASED RESTRICTED STOCK UNIT GRANT NOTICE AND AGREEMENT (Filed With SEC on March 4, 2013)

SUBLEASEAGREEMENT (Filed With SEC on March 4, 2013)

OFFICE LEASE KILROY REALTY KILROY UNIVERSITY CENTER KILROY REALTY, L.P., a Delaware limited partnership, as Landlord, and EBIOSCIENCE, INC., a California corporation, as Tenant. (Filed With SEC on March 4, 2013)

SUBLEASE AGREEMENT between LIGAND PHARMACEUTICALS INCORPORATED as Sublandlord and eBIOSCIENCE, INC. as Subtenant Building Address: 10255 Science Center Drive San Diego, California... (Filed With SEC on March 4, 2013)

VIENNA Standortmanagement GmbH Rotenturmstrae 17/3/17, A-1010 Wien T: +43/ 1/ 532,36,03, F: +4311 ###-###-####-9 ***@*** (Filed With SEC on March 4, 2013)

FIRST AMENDMENT TO CREDIT AGREEMENT (Filed With SEC on March 4, 2013)

SECOND AMENDMENT TO CREDIT AGREEMENT (Filed With SEC on March 4, 2013)

EXECUTIVE SEVERANCE POLICY (Amended as of May 11, 2012) (Filed With SEC on August 9, 2012)

AFFYMETRIX, INC.,Issuer and THE BANK OF NEW YORK MELLON TRUST COMPANY, N.A., Trustee INDENTURE Dated as of June 25, 2012 SENIOR DEBTSECURITIES TABLE OF CONTENTS (Filed With SEC on June 25, 2012)

AFFYMETRIX, INC. AND THE BANK OFNEW YORK MELLON TRUST COMPANY, N.A., as Trustee First Supplemental Indenture Dated as of June 25, 2012 to Indenture Dated as of June 25, 2012 4.00%... (Filed With SEC on June 25, 2012)

$100,000,000 CREDIT FACILITY CREDIT AGREEMENT Dated as of June 25, 2012 by and among AFFYMETRIX, INC., as the Borrower, THE OTHER PERSONS PARTY HERETO THAT ARE DESIGNATED AS... (Filed With SEC on June 25, 2012)

AMENDED AND RESTATED AGREEMENT AND PLAN OF MERGER BY AND AMONG AFFYMETRIX, INC., EXCALIBUR ACQUISITION SUB, INC., EBIOSCIENCE HOLDING COMPANY, INC. AND THE SECURITYHOLDERS... (Filed With SEC on May 31, 2012)

AGREEMENT AND PLAN OF MERGER BY AND AMONG AFFYMETRIX, INC. EXCALIBUR ACQUISITION SUB, INC., EBIOSCIENCE HOLDING COMPANY, INC. AND THE SECURITYHOLDERS REPRESENTATIVE NOVEMBER 29,... (Filed With SEC on February 28, 2012)

AFFYMETRIX, INC. PERFORMANCE BASED RESTRICTED STOCK UNIT GRANT NOTICE AND AGREEMENT (Filed With SEC on February 28, 2012)

SIXTH AMENDMENT TO LEASE (Filed With SEC on July 15, 2011)

SECOND AMENDMENT TO LEASE (Filed With SEC on July 15, 2011)

KeppelLogistics ADDENDUM TO LEASE AGREEMENT (Filed With SEC on February 28, 2011)

AFFYMETRIX, INC. A Delaware corporation Change of Control Plan (As Amended Through May 14, 2010) (Filed With SEC on May 18, 2010)

EXECUTIVE SEVERANCE POLICY Effective May 14, 2010 (Filed With SEC on May 18, 2010)

LEASE (Filed With SEC on May 6, 2010)

LEASEAGREEMENT (MULTITENANT FOR INDUSTRIAL/WAREHOUSE) BY ANDBETWEEN SBP LIMITED PARTNERSHIP("Landlord") and AFFYMETRIX, INC.("Tenant") DATED ASOF THE 10thDAYOF August, 2008 LEASE... (Filed With SEC on March 1, 2010)

FIRST AMENDMENT AND LEASEEXPANSION AGREEMENT (Filed With SEC on March 1, 2010)

LEASE between OTR and ANATRACE,INC. (Filed With SEC on March 1, 2010)

ASSIGNMENTAND ASSUMPTION OF LEASE (Filed With SEC on March 1, 2010)

AGREEMENT AND PLAN OF MERGER dated as of November 11, 2008 among PANOMICS, INC., AFFYMETRIX, INC., PANDA ACQUISITION CORPORATION and ANDREW SCHWAB, as Equityholders Representative (Filed With SEC on March 2, 2009)

AFFYMETRIX, INC. NON-QUALIFIED STOCK OPTION GRANTNOTICE AND AGREEMENT (Filed With SEC on March 2, 2009)

AFFYMETRIX, INC. RESTRICTED STOCK GRANT NOTICE AND AGREEMENT (Filed With SEC on March 2, 2009)

NONQUALIFIED SUPPLEMENTAL DEFERREDCOMPENSATION PLAN - PLAN DOCUMENT - (Filed With SEC on November 7, 2008)

NONQUALIFIED SUPPLEMENTAL DEFERRED COMPENSATION PLAN ADOPTION AGREEMENT (Filed With SEC on November 7, 2008)

AFFYMETRIX,INC. A Delawarecorporation Change ofControl Plan (As Amended Through November 5, 2008) (Filed With SEC on November 7, 2008)

AFFYMETRIX, INC. AMENDED AND RESTATED 2000 EQUITY INCENTIVE PLAN (AS ADOPTEDEFFECTIVE MARCH 9, 2000 AND AMENDED THROUGH JUNE 23, 2008) (Filed With SEC on August 8, 2008)

AFFYMETRIX, INC. A Delawarecorporation Change of Control Plan (As Amended Through May 16,2008) (Filed With SEC on August 8, 2008)

AGREEMENT (Filed With SEC on February 29, 2008)

AGREEMENT ANDPLAN OF MERGER byand among USB CORPORATION (an Ohio corporation) and SHAREHOLDERSOF USB CORPORATION and YEW ACQUISITION, INC. (a Delaware Corporation) and... (Filed With SEC on December 20, 2007)

AFFYMETRIX, INC. as Issuer and THE BANK OF NEW YORK TRUST COMPANY, N.A. as Trustee Indenture Dated as of November 16, 2007 3.50% Senior Convertible Notes Due 2038 (Filed With SEC on November 19, 2007)

Amendment Agreement December 22, 2006 (Filed With SEC on December 29, 2006)

LEASE (Filed With SEC on March 9, 2006)

AFFYMETRIX,INC. RESTRICTED STOCK AGREEMENT (Filed With SEC on March 9, 2006)

AGREEMENT AND PLAN OF MERGER AND REORGANIZATION dated as of May 31, 2005 among PARALLELE BIOSCIENCE, INC., AFFYMETRIX, INC. PINECONE ACQUISITION, INC. and JONATHAN MACQUITTY, as... (Filed With SEC on May 31, 2005)

FORM OF AFFYMETRIX,INC. NON-QUALIFIEDSTOCK OPTION AGREEMENT (Filed With SEC on November 9, 2004)

FORM OF AFFYMETRIX,INC. XXXXXXXXXSTOCK OPTION AGREEMENT (Filed With SEC on November 9, 2004)

Leasebetween SobratoInterests and Affymetrix (Filed With SEC on March 15, 2004)

FIRST AMENDMENT TO LEASE (Filed With SEC on March 15, 2004)

Loan Agreement between Barbara A. Caulfieldand Affymetrix, Inc. (Filed With SEC on March 15, 2004)

PROMISSORY NOTE SECURED BY DEED OF TRUST (HOUSING RELOCATION LOAN PURSUANT TO AN EXTENSION OF CREDIT MADE ON JUNE 21, 2002) (Filed With SEC on May 15, 2003)

COMMON TERMS AGREEMENT F. Hoffmann-LaRoche Ltd. and Affymetrix, Inc. dated January 29,2003 CONTENTS (Filed With SEC on May 15, 2003)

License Agreement F. Hoffmann-La Roche Ltd. and Affymetrix, Inc. dated January 29, 2003 CONTENTS (Filed With SEC on May 15, 2003)

AffymetrixInstrument and Chip Supply Agreement F. Hoffmann-La Roche Ltd. and Affymetrix, Inc. dated January 29, 2003 TABLE OF CONTENTS (Filed With SEC on May 15, 2003)

Research & Development CollaborationAgreement F. Hoffmann-La Roche Ltd. and Affymetrix, Inc. dated January 29, 2003 TABLE OF CONTENTS (Filed With SEC on May 15, 2003)

Diagnostic Product and Instrument Agency Agreement F. Hoffmann-La Roche Ltd. and Affymetrix, Inc. dated January 29, 2003 CONTENTS (Filed With SEC on May 15, 2003)

Affymetrix Instrument Agency Agreement F. Hoffmann-La Roche Ltd. and Affymetrix, Inc. dated January 29, 2003 CONTENTS (Filed With SEC on May 15, 2003)

AMENDMENTNO. 1 TO PROMISSORY NOTE (Filed With SEC on May 15, 2002)

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AFFYMETRIX INC Contracts & Agreements